Laboratory of Sudhir Kumar :: Publications 2016-2018



RelTime Relaxes the Strict Molecular Clock Throughout the Phylogeny

bioRxiv preprint

F. U. Battistuzzi, Q. Tao, L. Jones, K. Tamura, S. Kumar


Theoretical Foundation of the RelTime Method for Estimating Divergence Times from Variable Evolutionary Rates

bioRxiv preprint

K. Tamura, Q. Tao, S. Kumar


Somatic Evolutionary Timings of Driver Mutations

BMC Cancer 18(85):10 pp

K. Gomez, S. Miura, L. A. Huuki, B.S. Spell, J.P. Townsend, S. Kumar



FlyExpress 7: An Integrated Discovery Platform to Study Co-expressed Genes Using in situ Hybridization Images in Drosophila

Genes, Genomes, Genetics (G3) 7(8):2791-2797

S. Kumar, C. Konikoff, M. Sanderford, L. Liu, S. Newfeld, J. Ye, R.J. Kulathinal


TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

Molecular Biology and Evolution 34(7):1812-1819

S. Kumar, G. Stecher, M. Suleski, S. B. Hedges


The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data

Molecular Biology and Evolution 34(3):718-723

Y. Katsura, C. Stanley, S. Kumar, M. Nei


Fast and Accurate Estimates of Divergence Times From Big Data

Molecular Biology and Evolution 34(1):45-50

B. Mello, Q. Tao, K. Tamura, S. Kumar



e-GRASP: An Integrated Evolutionary and GRASP Resource for Exploring Disease Associations

BMC Genomics 17(9):8 pp

S. Karim, H.F. Nour Eldin, H. Abusamra, N. Salem, E. Alhathli, J. Dudley, M.D. Sanderford, L.B. Scheinfeldt A.G. Chaudhary, M.H. Al-Qahtani, S. Kumar


Deep Model Based Transfer and Multi-Task Learning for Biological Image Analysis

Transactions on Big Data

W. Zhang, R. Li, T. Zeng, Q. Sun, S. Kumar, J. Ye, S. Ji


MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Molecular Biology and Evolution 33(7):1870-1874

S. Kumar, G. Stecher, K. Tamura


A Molecular Evolutionary Reference for the Human Variome

Molecular Biology and Evolution 33(1):245-254

L. Liu, K. Tamura, M.D. Sanderford, V. Gray, S. Kumar


Advances in Time Estimation Methods for Molecular Data

Molecular Biology and Evolution 33(4):863-869

S. Kumar, S.B. Hedges