Laboratory of Sudhir Kumar :: Publications 2016-2018

2018

155

Adaptive landscape of protein variation in human exomes

bioRxiv preprint

R. Patel, M. D. Sanderford, T. R. Lanham, K. Tamura, A. Platt, B. S. Gilksberg, J. T. Dudley, K. Xu, L. B. Scheinfeldt, S. Kumar

154

RelTime Relaxes the Strict Molecular Clock Throughout the Phylogeny

bioRxiv preprint

F. U. Battistuzzi, Q. Tao, L. Jones, K. Tamura, S. Kumar

153

Theoretical Foundation of the RelTime Method for Estimating Divergence Times from Variable Evolutionary Rates

Molecular Biology and Evolution

K. Tamura, Q. Tao, S. Kumar

152

Somatic Evolutionary Timings of Driver Mutations

BMC Cancer 18(85):10 pp

K. Gomez, S. Miura, L. A. Huuki, B.S. Spell, J.P. Townsend, S. Kumar

2017

151

FlyExpress 7: An Integrated Discovery Platform to Study Co-expressed Genes Using in situ Hybridization Images in Drosophila

Genes, Genomes, Genetics (G3) 7(8):2791-2797

S. Kumar, C. Konikoff, M. Sanderford, L. Liu, S. Newfeld, J. Ye, R.J. Kulathinal

150

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

Molecular Biology and Evolution 34(7):1812-1819

S. Kumar, G. Stecher, M. Suleski, S. B. Hedges

149

The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data

Molecular Biology and Evolution 34(3):718-723

Y. Katsura, C. Stanley, S. Kumar, M. Nei

148

Fast and Accurate Estimates of Divergence Times From Big Data

Molecular Biology and Evolution 34(1):45-50

B. Mello, Q. Tao, K. Tamura, S. Kumar

2016

147

e-GRASP: An Integrated Evolutionary and GRASP Resource for Exploring Disease Associations

BMC Genomics 17(9):8 pp

S. Karim, H.F. Nour Eldin, H. Abusamra, N. Salem, E. Alhathli, J. Dudley, M.D. Sanderford, L.B. Scheinfeldt A.G. Chaudhary, M.H. Al-Qahtani, S. Kumar

146

Deep Model Based Transfer and Multi-Task Learning for Biological Image Analysis

Transactions on Big Data

W. Zhang, R. Li, T. Zeng, Q. Sun, S. Kumar, J. Ye, S. Ji

145

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Molecular Biology and Evolution 33(7):1870-1874

S. Kumar, G. Stecher, K. Tamura

144

A Molecular Evolutionary Reference for the Human Variome

Molecular Biology and Evolution 33(1):245-254

L. Liu, K. Tamura, M.D. Sanderford, V. Gray, S. Kumar

143

Advances in Time Estimation Methods for Molecular Data

Molecular Biology and Evolution 33(4):863-869

S. Kumar, S.B. Hedges