Discovering Fragile Clades And Causal Sequences In Phylogenomics By Evolutionary Sparse Learning

Molecular Biology and Evolution | 41:msae131 (13 pp)

S. Sharma, S. Kumar

Methods for Estimating Personal Disease Risk and Phylogenetic Diversity of Hematopoietic Stem Cells

Molecular Biology and Evolution | 41:msad279 (11 pp)

J.M. Craig, G.S. Gerhard, S. Sharma, A. Yankovskiy, S. Miura, S. Kumar

Visualizing Genomic Medicine: An Introduction to General Biology

The American Biology Teacher | 86:265–273 (9 pp)

C. Babaian, S. Kumar

Of Phylogenies and Tumors: Cancer as a Model System to Teach Evolution

The American Biology Teacher | 86:62–70 (9 pp)

C. Babaian, S. Kumar

Some Mechanistic Underpinnings of Molecular Adaptations of SARS-COV-2 Spike Protein by Integrating Candidate Adaptive Polymorphisms with Protein Dynamics

eLife | 12:RP92063 (25 pp)

N. Ose, P. Campitelli, T. Modi, I. Kazan, S. Kumar, B. Ozkan

Analyses of Allele Age and Fitness Impact Reveal Human Beneficial Alleles to be Older than Neutral Controls

eLife | 13:RP93258 (27 pp)

A. Pivirotto, A. Platt, R. Patel, S. Kumar, J. Hey

Completing a Molecular Timetree of Primates

Frontiers in Bioinformatics | 4:(accepted)

J.M. Craig, S.B. Hedges, S. Kumar

MEGA12: Molecular Evolutionary Genetics Analysis version 12 for adaptive and green computing

Molecular Biology and Evolution | (in review)

S. Kumar, G. Stecher, M. Suleski, M. Sanderford, S. Sharma, K. Tamura

MyESL: Sparse learning in molecular evolution and phylogenetic analysis

Bioinformatics | (in review)

M. Sanderford, S. Sharma, G. Stecher, J. Liu, J. Ye, S. Kumar

STICI: Split-Transformer with Integrated Convolutions for Imputation

Nature Communications | (in revision)

M.E. Mowlaei, C. Li, O. Jamialahmadi, R. Dias, J. Chen, B. Jamialahmadi, T.R. Rebbeck, V. Carnevale, S. Kumar, X. Shi

Evolutionary Sparse Learning Reveals the Shared Genetic Basis of Convergent Traits

bioRxiv | (in revision)

J. Allard , S. Sharma , R. Patel , M. Sanderford , K. Tamura , S. Vucetic , G. Gerhard, S. Kumar

Integrating Phylogenies with Chronology to Assemble the Tree of Life

Bioinformatics | (in revision)

J. Barba-Montoya, J.M. Craig, S. Kumar

R3F: An R Package for Evolutionary Dates, Rates, and Priors using Relative Rate Framework

bioRxiv | (available)

Q. Tao, S. Sharma, K. Tamura, S. Kumar