An Evolutionary Portrait of the Progenitor SARS-CoV-2 and its Dominant Offshoots in COVID-19 Pandemic
Molecular Biology and Evolution | 38:3046–3059
Evolutionary sparse learning for phylogenomics
Molecular Biology and Evolution | 38:4674–4682
Fast and accurate bootstrap confidence limits on genome-scale phylogenies using little bootstraps
Nature Computational Science | 1:573–577
Migrations of cancer cells through the lens of phylogenetic biogeography
Scientific Reports | 11:17184
Data-driven Speciation Tree Prior for Better Species Divergence Times in Calibration-poor Molecular Phylogenies
Bioinformatics | 37:i102–i110
Epistasis Produces an Excess of Invariant Sites in Neutral Molecular Evolution
Proceedings of the National Academy of Sciences (USA) | 118:e2018767118
MEGA11: Molecular Evolutionary Genetics Analysis version 11
Molecular Biology and Evolution | 38:3022–3027
Molecular Dating for Phylogenies Containing a Mix of Populations and Species by Using Bayesian and RelTime Approaches
Molecular Ecology Resources | 21:122–136
How to Build a Super Predator: From Genotype to Phenotype
The American Biology Teacher | 83:138–146
Assessing rapid relaxed-clock methods for phylogenomic dating
Genome Biology and Evolution | 13:evab251 (pp)
Molecular and Morphological Clocks for Estimating Evolutionary Divergence Times
BMC Ecology and Evolution | 21:83 (15 pp)
Common Treatment, Common Variant: Evolutionary Prediction of Functional Pharmacogenomic Variants
Journal of Personalized Medicine | 11:131 (13 pp)
TreeMap: A Structured Approach to Fine Mapping of eQTL Variants
Bioinformatics | 37:1125–1134
The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study
The Lancet Microbe | 12:e666–e675
The somatic molecular evolution of cancer: mutation, selection, and epistasis
Progress in Biophysics and Molecular Biology | 165:56–65