An Evolutionary Portrait of the Progenitor SARS-CoV-2 and its Dominant Offshoots in COVID-19 Pandemic

Molecular Biology and Evolution | (Accepted):(https://doi.org/10.1101/2020.09.24.311845)

S. Kumar, Q. Tao, S. Weaver, M. Sanderford, M. A. Caraballo-Ortiz, S. Sharma, S. L. K. Pond, S. Miura


Epistasis Produces an Excess of Invariant Sites in Neutral Molecular Evolution

Proceedings of the National Academy of Sciences (USA) | (in press)

R. Patel and S. Kumar


MEGA11: Molecular Evolutionary Genetics Analysis version 11

Molecular Biology and Evolution | (Accepted)

K. Tamura, G. Stecher, S. Kumar


Molecular Dating for Phylogenies Containing a Mix of Populations and Species by Using Bayesian and RelTime Approaches

Molecular Ecology Resources | 21:122–136

B. Mello, Q. Tao, J. Barba-Montoya, S. Kumar


How to Build a Super Predator: From Genotype to Phenotype

The American Biology Teacher | 83:138–146

C. Babaian, S. Kumar


Data-driven Speciation Tree Prior for Better Species Divergence Times in Calibration-poor Molecular Phylogenies

Bioinformatics | (Accepted):(https://doi.org/10.1101/2021.03.27.437326)

Q. Tao, J. Barba-Montoya, S. Kumar


Common Treatment, Common Variant: Evolutionary Prediction of Functional Pharmacogenomic Variants

Journal of Personalized Medicine | 11:131 (13 pp)

L. B. Scheinfeldt, A. Brangan, D. Kusic, S. Kumar, N. Gharani


TreeMap: A Structured Approach to Fine Mapping of eQTL Variants

Bioinformatics | (in press):(https://doi.org/10.1101/2020.05.31.125880)

L. Liu, P. Chandrashekar, B. Zeng, M. D. Sanderford, S. Kumar, G. Gibson


Phylomedicine of Mutational Processes in Somatic Cancer Cell Populations

eLife | (in review):(https://doi.org/10.1101/2021.04.02.438268)

S. Miura, T. Vu, J. Choi, S. Kumar


Molecular and Morphological Clocks for Estimating Evolutionary Divergence Times

BMC Ecology and Evolution | (in review):(https://doi.org/10.21203/rs.3.rs-29165/v1)

J. Barba-Montoya, Q. Tao, S. Kumar