2024
241

Discovering Fragile Clades And Causal Sequences In Phylogenomics By Evolutionary Sparse Learning

Molecular Biology and Evolution | 41:msae131 (31 pp)

S. Sharma, S. Kumar

240

Methods for Estimating Personal Disease Risk and Phylogenetic Diversity of Hematopoietic Stem Cells

Molecular Biology and Evolution | 41:msad279 (11 pp)

J.M. Craig, G.S. Gerhard, S. Sharma, A. Yankovskiy, S. Miura, S. Kumar

239

Visualizing Genomic Medicine: An Introduction to General Biology

The American Biology Teacher | 86:265–273 (9 pp)

C. Babaian, S. Kumar

238

Of Phylogenies and Tumors: Cancer as a Model System to Teach Evolution

The American Biology Teacher | 86:62–70 (9 pp)

C. Babaian, S. Kumar

237

Some Mechanistic Underpinnings of Molecular Adaptations of SARS-COV-2 Spike Protein by Integrating Candidate Adaptive Polymorphisms with Protein Dynamics

eLife | 12:RP92063 (25 pp)

N. Ose, P. Campitelli, T. Modi, I. Kazan, S. Kumar, B. Ozkan

236

Analyses of Allele Age and Fitness Impact Reveal Human Beneficial Alleles to be Older than Neutral Controls

eLife | 13:RP93258 (27 pp)

A. Pivirotto, A. Platt, R. Patel, S. Kumar, J. Hey

235

MyESL: Sparse learning in molecular evolution and phylogenetic analysis

Bioinformatics | (in review)

M. Sanderford, S. Sharma, G. Stecher, J. Liu, J. Ye, S. Kumar

234

Split-Transformer Impute (STI): A Transformer Framework for Genotype Imputation

bioRxiv | (in revision)

M.E. Mowlaei, C. Li, O. Jamialahmadi, R. Dias, J. Chen, B. Jamialahmadi, T.R. Rebbeck, V. Carnevale, S. Kumar, X. Shi

233

Evolutionary Sparse Learning Reveals the Shared Genetic Basis of Convergent Traits

bioRxiv | (in revision)

J. Allard , S. Sharma , R. Patel , M. Sanderford , K. Tamura , S. Vucetic , G. Gerhard, S. Kumar

232

Integrating Phylogenies with Chronology to Assemble the Tree of Life

bioRxiv | (submitted)

J. Barba-Montoya, J.M. Craig, S. Kumar

231

R3F: An R Package for Evolutionary Dates, Rates, and Priors using Relative Rate Framework

bioRxiv | (available)

Q. Tao, S. Sharma, K. Tamura, S. Kumar