Epistasis Creates Invariant Sites and Modulates the Rate of Molecular Evolution

Molecular Biology and Evolution | (in revision/review)

R. Patel, V. Carnevale, S. Kumar


TopHap: Rapid Inference of Key Phylogenetic Structures from Common Haplotypes in Large Genome Collections with Limited Diversity

Bioinformatics | (in revision/review):(https://doi.org/10.1101/2021.12.13.472454)

M. Caraballo-Ortiz, S. Miura, M. Sanderford, T. Dolker, Q. Tao, S. Weaver, S. L. K. Pond, S. Kumar


Evolution of Somatic Mutational Processes in Cancer

Communications Biology | (in revision/review):(https://doi.org/10.1101/2021.04.02.438268)

S. Miura, T. Vu, J. Choi, J. P. Townsend, S. Karim, S. Kumar


Storyboarding for Biology: An Authentic STEAM Experience

The American Biology Teacher | (in revision/review)

C. Babaian, S. Kumar


MOCA for Integrated Analysis of Gene Expression and Genetic Variation in Single Cells

Frontiers in Genetics | (in revision/review)

J. Huzar, H. Kim, S. Kumar, S. Miura


Limitations of Phylogenomic Data can Drive Inferred Speciation Rate Shifts

Molecular Biology and Evolution | (in revision/review)

J. M. Craig, S. Kumar, S. B. Hedges


Dynamic Coupling of Residues within Proteins as a Mechanistic Foundation of Many Enigmatic Pathogenic Missense Variants

PLoS Computational Biology | (in revision/review)

N. J. Ose, B. M. Butler, A. Kumar, M. Sanderford, S. Kumar, S. B. Ozkan


RRF: An R Package for Evolutionary Dates, Rates, and Priors using Relative Rate Framework

Preprint in bioRxiv

Q. Tao, . Sharma, S. Kumar


Evidence for SARS-CoV-2 Infection since Late Summer 2019 in Northern Italy

Preprints with The Lancet | (https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3883274)

A. Amendola, M. Canuti, S. Bianchi, S. Kumar, C. Fappani, M. Gori, D. Colzani, S. L. K. Pond, S. Miura, M. Baggeri, A. Marchi, E. Borghi, G. V. Zuccotti, M. C. Raviglione, F. Magurano, E. Tanzi


Development of "Biosearch System" for Biobank Management and Storage of Disease Associated Genetic Information

ScienceDirect | 34:101760 (10 pp)

S. Karim, M. Al-Kharraz, Z. Mirza, H. Noureldin, H. Abusamara, N. Alganmi, A. Merdad, S. Jastaniah, S. Kumar, M. Rasool, A. Abuzenadah, M. Al-Qahtani