2024
242

Discovering Fragile Clades And Causal Sequences In Phylogenomics By Evolutionary Sparse Learning

Molecular Biology and Evolution | 41:msae131 (13 pp)

S. Sharma, S. Kumar

241

Methods for Estimating Personal Disease Risk and Phylogenetic Diversity of Hematopoietic Stem Cells

Molecular Biology and Evolution | 41:msad279 (11 pp)

J.M. Craig, G.S. Gerhard, S. Sharma, A. Yankovskiy, S. Miura, S. Kumar

240

Visualizing Genomic Medicine: An Introduction to General Biology

The American Biology Teacher | 86:265–273 (9 pp)

C. Babaian, S. Kumar

239

Of Phylogenies and Tumors: Cancer as a Model System to Teach Evolution

The American Biology Teacher | 86:62–70 (9 pp)

C. Babaian, S. Kumar

238

Some Mechanistic Underpinnings of Molecular Adaptations of SARS-COV-2 Spike Protein by Integrating Candidate Adaptive Polymorphisms with Protein Dynamics

eLife | 12:RP92063 (25 pp)

N. Ose, P. Campitelli, T. Modi, I. Kazan, S. Kumar, B. Ozkan

237

Analyses of Allele Age and Fitness Impact Reveal Human Beneficial Alleles to be Older than Neutral Controls

eLife | 13:RP93258 (27 pp)

A. Pivirotto, A. Platt, R. Patel, S. Kumar, J. Hey

236

MEGA12: Molecular Evolutionary Genetic Analysis version 12 for adaptive and green computing

Molecular Biology and Evolution | (in review)

S. Kumar, G. Stecher, M. Suleski, M. Sanderford, S. Sharma, K. Tamura

235

MyESL: Sparse learning in molecular evolution and phylogenetic analysis

Bioinformatics | (in review)

M. Sanderford, S. Sharma, G. Stecher, J. Liu, J. Ye, S. Kumar

234

Split-Transformer Impute (STI): A Transformer Framework for Genotype Imputation

bioRxiv | (in revision)

M.E. Mowlaei, C. Li, O. Jamialahmadi, R. Dias, J. Chen, B. Jamialahmadi, T.R. Rebbeck, V. Carnevale, S. Kumar, X. Shi

233

Evolutionary Sparse Learning Reveals the Shared Genetic Basis of Convergent Traits

bioRxiv | (in revision)

J. Allard , S. Sharma , R. Patel , M. Sanderford , K. Tamura , S. Vucetic , G. Gerhard, S. Kumar

232

Integrating Phylogenies with Chronology to Assemble the Tree of Life

bioRxiv | (submitted)

J. Barba-Montoya, J.M. Craig, S. Kumar

231

R3F: An R Package for Evolutionary Dates, Rates, and Priors using Relative Rate Framework

bioRxiv | (available)

Q. Tao, S. Sharma, K. Tamura, S. Kumar